Search results

Radial kernel + cutoff for neighborhood graph

Status: Open.

#1241 In scverse/squidpy;

· durr1602 opened on Jul 7, 2026

Tutorial request: Stereo-seq (BGI STOmics) analysis — bin vs cellbin

Status: Open.

#1228 In scverse/squidpy;

· asmlgkj opened on Jun 24, 2026

Add persistence diagrams for persistent homology analysis

Status: Open.

#1225 In scverse/squidpy;

· a12dongithub opened on Jun 22, 2026

pl.ligrec does not match pvaule table output

Status: Open.

#1201 In scverse/squidpy;

· LukasNbio opened on Jun 4, 2026

speed up _resolve_data in spatial neighbors when working with spatialdata

Status: Open.

#1199 In scverse/squidpy;

· grst opened on Jun 3, 2026

Refactor gr.calculate_niche into separate functions

Status: Open.

#1192 In scverse/squidpy;

· grst opened on May 29, 2026

Public api change: rename adata to data and make it positional only

Status: Open.

#1180 In scverse/squidpy;

· selmanozleyen opened on May 15, 2026

spatial_neighbour_x should have serializable internals to avoid uns formats

Status: Open.

#1174 In scverse/squidpy;

· selmanozleyen opened on May 12, 2026

Why does co_occurence not use a pre-calculated spatial graph

Status: Open.

#1165 In scverse/squidpy;

· grst opened on Apr 23, 2026

Feature request: contour-based inward/outward ring density for cells and transcripts around polygon annotations

Status: Open.

#1160 In scverse/squidpy;

· hutaobo opened on Apr 16, 2026

n-hop neighbors in spatial graph

Status: Open.

#1159 In scverse/squidpy;

· grst opened on Apr 14, 2026

rectangle as shape

Status: Open.

#1155 In scverse/squidpy;

· MathildaStigenberg opened on Apr 10, 2026